Computes upper bounds for general edit costs. More...

#include <subgraph.hpp>

Inheritance diagram for ged::Subgraph< UserNodeLabel, UserEdgeLabel >:

Private Member Functions
virtual void	lsape_set_default_options_ () final
	Sets all options that are not among the ones shared by all derived classes of ged::LSAPEBasedMethod to default values. More...

virtual std::string	lsape_valid_options_string_ () const final
	Returns string of all valid options that are not among the ones shared by all derived classes of ged::LSAPEBasedMethod. More...

virtual bool	lsape_parse_option_ (const std::string &option, const std::string &arg) final
	Parses one option that is not among the ones shared by all derived classes of ged::LSAPEBasedMethod. More...

virtual void	lsape_init_graph_ (const GEDGraph &graph) final
	Initializes global variables for one graph. More...

virtual void	lsape_init_ () final
	Initializes the method after initializing the global variables for the graphs. More...

virtual void	lsape_populate_instance_ (const GEDGraph &g, const GEDGraph &h, DMatrix &master_problem) final
	Populates the LSAPE instance. More...

virtual void	lsape_pre_graph_init_ (bool called_at_runtime) final
	Initializes the method at runtime or during initialization before initializing the global variables for the graphs. More...

Additional Inherited Members
Public Member Functions inherited from ged::LSAPEBasedMethod< UserNodeLabel, UserEdgeLabel >
virtual	~LSAPEBasedMethod ()=0
	Pure virtual destructor. More...

	LSAPEBasedMethod (const GEDData< UserNodeLabel, UserEdgeLabel > &ged_data)
	Constructor. More...

void	populate_instance_and_run_as_util (const GEDGraph &g, const GEDGraph &h, Result &result, DMatrix &lsape_instance)
	Runs the method with options specified by set_options() and provides access to constructed LSAPE instance. More...

void	populate_instance (const GEDGraph &g, const GEDGraph &h, DMatrix &lsape_instance)
	Populates the LSAPE instance. More...

Public Member Functions inherited from ged::GEDMethod< UserNodeLabel, UserEdgeLabel >
virtual	~GEDMethod ()=0
	Pure virtual destructor. More...

	GEDMethod (const GEDData< UserNodeLabel, UserEdgeLabel > &ged_data)
	Constructor. More...

void	set_options (const std::string &options)
	Sets the options of the method. More...

void	run (GEDGraph::GraphID g_id, GEDGraph::GraphID h_id)
	Runs the method with options specified by set_options(). More...

void	run_as_util (const GEDGraph &g, const GEDGraph &h, Result &result)
	Runs the method with options specified by set_options(). More...

void	init ()
	Initializes the method with options specified by set_options().

double	get_upper_bound () const
	Returns an upper bound. More...

double	get_lower_bound () const
	Returns a lower bound. More...

Seconds	get_runtime () const
	Returns the runtime. More...

Seconds	get_init_time () const
	Returns the initialization time. More...

const NodeMap &	get_node_map () const
	Returns a graph matching. More...

Protected Attributes inherited from ged::LSAPEBasedMethod< UserNodeLabel, UserEdgeLabel >
LSAPESolver::Model	lsape_model_
	Specifies model for optimal LSAPE solver.

LSAPESolver::GreedyMethod	greedy_method_
	Specifies method for greedy LSAPE solver.

bool	compute_lower_bound_
	Flag that should be set to `true` if and only if the method computes a lower bound.

bool	solve_optimally_
	Flag that equals `true` if an optimal LSAPE solver is used and `false` if a greedy method is employed.

std::size_t	num_threads_
	The number of threads to be used.

Protected Attributes inherited from ged::GEDMethod< UserNodeLabel, UserEdgeLabel >
bool	initialized_
	A flag that equals true if init() has been called and false otherwise.

const GEDData< UserNodeLabel, UserEdgeLabel > &	ged_data_
	The data on which the method is run.

Detailed Description

template<class UserNodeLabel, class UserEdgeLabel>
class ged::Subgraph< UserNodeLabel, UserEdgeLabel >

Computes upper bounds for general edit costs.

Implements the method Subgraph suggested in:

V. Carletti, B. Gaüzère, L. Brun, and M. Vento: “Approximate graph edit distance computation combining bipartite matching and exact neighborhood substructure distance”, https://doi.org/10.1007/978-3-319-18224-7_19

Supports the following option in addition to the ones supported by ged::LSAPEBasedMethod:

`--<option> <arg>`	modified parameter	default	more information
`--load <filename>`	path to existing configuration file	not specified	n.a.
`--save <filename>`	path where to save configuration file	not specified	n.a.
`--subproblem-solver ANCHOR_AWARE_GED\|F1\|F2\|COMPACT_MIP`	method for exactly solving the subproblems	`ANCHOR_AWARE_GED`	the methods F1, F2, and COMPACT_MIP are available only if GEDLIB is installed with Gurobi
`--subproblem-solver-options '[–<option> <arg>] [...]'`	options string passed to the ground truth method	`''`	ged::AnchorAwareGED, ged::F1, ged::F2, ged::CompactMIP
`--depth-range <smaller convertible to int greater 0>,<larger convertible to int greater 0>`	range that specifies possible depths of the subgraphs	`1,5`	if the range is larger than one, the best choice is determined via cross-validation during initialization and the mean is used if the method is run without prior initialization

Definition at line 49 of file subgraph.hpp.

Member Function Documentation

◆ lsape_init_()

template<class UserNodeLabel , class UserEdgeLabel >

void ged::Subgraph< UserNodeLabel, UserEdgeLabel >::lsape_init_ ( )

finalprivatevirtual

Initializes the method after initializing the global variables for the graphs.

Note: Must be overridden by derived classes of ged::LSAPEBasedMethod that require custom initialization.

Reimplemented from ged::LSAPEBasedMethod< UserNodeLabel, UserEdgeLabel >.

Definition at line 253 of file subgraph.ipp.

◆ lsape_init_graph_()

template<class UserNodeLabel , class UserEdgeLabel >

void ged::Subgraph< UserNodeLabel, UserEdgeLabel >::lsape_init_graph_ ( const GEDGraph & graph )

finalprivatevirtual

Initializes global variables for one graph.

Parameters

[in] graph Graph for which the global variables have to be initialized.

Note: Must be overridden by derived classes of ged::LSAPEBasedMethod that require to initialize custom global variables.

Reimplemented from ged::LSAPEBasedMethod< UserNodeLabel, UserEdgeLabel >.

Definition at line 204 of file subgraph.ipp.

◆ lsape_parse_option_()

template<class UserNodeLabel , class UserEdgeLabel >

bool ged::Subgraph< UserNodeLabel, UserEdgeLabel >::lsape_parse_option_	(	const std::string &	option,
		const std::string &	arg
	)

finalprivatevirtual

Parses one option that is not among the ones shared by all derived classes of ged::LSAPEBasedMethod.

Parameters

[in]	option	The name of the option.
[in]	arg	The argument of the option.

Returns: Returns true if option is a valid option name for the method and false otherwise.

Note: Must be overridden by derived classes of ged::LSAPEBasedMethod that have options that are not among the ones shared by all derived classes of ged::LSAPEBasedMethod.

Reimplemented from ged::LSAPEBasedMethod< UserNodeLabel, UserEdgeLabel >.

Definition at line 77 of file subgraph.ipp.

◆ lsape_populate_instance_()

template<class UserNodeLabel , class UserEdgeLabel >

void ged::Subgraph< UserNodeLabel, UserEdgeLabel >::lsape_populate_instance_	(	const GEDGraph &	g,
		const GEDGraph &	h,
		DMatrix &	lsape_instance
	)

finalprivatevirtual

Populates the LSAPE instance.

Parameters

[in]	g	Input graph.
[in]	h	Input graph.
[out]	lsape_instance	LSAPE instance of size (n + 1) x (m + 1), where n and m are the number of nodes in `g` and `h`. The last row and the last column represent insertion and deletion.

Note: Must be overridden by derived classes of ged::LSAPEBasedMethod.

Reimplemented from ged::LSAPEBasedMethod< UserNodeLabel, UserEdgeLabel >.

Definition at line 174 of file subgraph.ipp.

◆ lsape_pre_graph_init_()

template<class UserNodeLabel , class UserEdgeLabel >

void ged::Subgraph< UserNodeLabel, UserEdgeLabel >::lsape_pre_graph_init_ ( bool called_at_runtime )

finalprivatevirtual

Initializes the method at runtime or during initialization before initializing the global variables for the graphs.

Parameters

[in] called_at_runtime Equals true if called at runtime and false if called during initialization. Must be overridden by derived classes of ged::LSAPEBasedMethod that require default initialization at runtime before initializing the global variables for the graphs.

Reimplemented from ged::LSAPEBasedMethod< UserNodeLabel, UserEdgeLabel >.

Definition at line 239 of file subgraph.ipp.

◆ lsape_set_default_options_()

template<class UserNodeLabel , class UserEdgeLabel >

void ged::Subgraph< UserNodeLabel, UserEdgeLabel >::lsape_set_default_options_ ( )

finalprivatevirtual

Sets all options that are not among the ones shared by all derived classes of ged::LSAPEBasedMethod to default values.

Note: Must be overridden by derived classes of ged::LSAPEBasedMethod that have options that are not among the ones shared by all derived classes of ged::LSAPEBasedMethod.

Reimplemented from ged::LSAPEBasedMethod< UserNodeLabel, UserEdgeLabel >.

Definition at line 57 of file subgraph.ipp.

◆ lsape_valid_options_string_()

template<class UserNodeLabel , class UserEdgeLabel >

std::string ged::Subgraph< UserNodeLabel, UserEdgeLabel >::lsape_valid_options_string_ ( ) const

finalprivatevirtual

Returns string of all valid options that are not among the ones shared by all derived classes of ged::LSAPEBasedMethod.

Returns: String of the form "[--<option> <arg>] [...]".

Note: Must be overridden by derived classes of ged::LSAPEBasedMethod that have options that are not among the ones shared by all derived classes of ged::LSAPEBasedMethod.

Reimplemented from ged::LSAPEBasedMethod< UserNodeLabel, UserEdgeLabel >.

Definition at line 70 of file subgraph.ipp.

The documentation for this class was generated from the following files:

src/methods/subgraph.hpp
src/methods/subgraph.ipp

Private Member Functions

Additional Inherited Members

Detailed Description

template<class UserNodeLabel, class UserEdgeLabel> class ged::Subgraph< UserNodeLabel, UserEdgeLabel >

Member Function Documentation

◆ lsape_init_()

◆ lsape_init_graph_()

◆ lsape_parse_option_()

◆ lsape_populate_instance_()

◆ lsape_pre_graph_init_()

◆ lsape_set_default_options_()

◆ lsape_valid_options_string_()

template<class UserNodeLabel, class UserEdgeLabel>
class ged::Subgraph< UserNodeLabel, UserEdgeLabel >